. Run the following command:
stsadm -o databaserepair -url http://<URL_of_WindowsSharePointServices_Site> -databasename <name of database that contains the orphan item>
2. If the above command reveals any orhpaned sites, then run the above command with -deletecorruption parameter:
stsadm -o databaserepair -url http://<URL_of_WindowsSharePointServices_Site> -databasename <name of database that contains the orphan item that is to be deleted> –deletecorruption
it should delete the site collection
if not check the content database associates with the orphaned site and delete the content data base
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